AT2G33360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF3527) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF3527); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3527 (InterPro:IPR021916); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF3527) (TAIR:AT1G04490.2); Has 134 Blast hits to 133 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 2; Plants - 120; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14140901..14142870 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66510.70 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSVSPDAQK DDLELEDSLN IDENLSGGNG LLKSGNLLSQ KRQQCSLVSN SGKWLQIVKN GPKGSFSRAT SFFDNKIPRQ LVSVDEKYLR RCLDLINISA 101: FKSASCSLSL NLVGSKMSLS SRRFDLPVIP KENVARLVFD LPLVDDSGSP VISRAIIGCK RVTYMLDKPT LHSLEALDGD GNNIGTRRDH NGESELVSYD 201: VVRKIEEKNT PDSQFLSYHS GNMPRKAVSL SSTNSLSSSS SEQSSSSWSP SSSVSQGTLQ FTMKDNKTPH FVFSLDDQKE IYVASLSTTS VGSGFDRSSL 301: DYSYLIHLKK GRGSEPQHLV GKLKVSTLFS VSSTNEKTVE RQFVLFSSGG NPQLPCHKDI RKNRGLPKKV VDALKSTKRT SRQRSISRFS RTSSIPDFCS 401: WEPFQEHDSD LEPISLLDND LPPNLETSAV VVREQFPVEE EEEEEVEKVG GWGMKFLKKI PLARTKDASK CSKHSTSIDV VIPLGIHGGP RNRNGGPSSL 501: IQRWKSGGCC DCSGWDLGCP LTVLKGQARK DQSEGQCNLF ELFTEGLMQG SPGLRIMNVR DGLYFVQSQA KISVLQSFSI ALAYIHSQSQ RLRPWSSKKC 601: TEA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)