AT2G32640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Lycopene beta/epsilon cyclase protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Lycopene beta/epsilon cyclase protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lycopene beta/epsilon cyclase (InterPro:IPR008671); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:13847197..13850811 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64613.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.82 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVLQIHQFN GFVSSVSRAQ TNQGRRRAST TVCVQTQLAP SLTQKIMESI SVGGEAGGAG GAYSYNALKR LDNIWSNICT QPTGPQETQQ IVSRVSGFSQ 101: DYSMGNNLVG TFDIVVCGGT LGIFLATALC AKGLRVAVVE RNAIKGRDQE WNISRKEMKE LTEVRVLTED EIEEVIAAKF NPNRCGFENL GDIWVEDILN 201: LGVSPAKLVE TVKQRFISLG GVILEDSSLS SIVIYNDLAV MQLSKGDTLS SRLVIDAMGN FSPILKQIKR GRKPDGMCLV VGSCAHGFKE NSSSDVIYSS 301: SSVTRVADSN VQLFWEAFPA GSGPLDRTTY MFTYTEPQST SPSLEDLLEE YWKLMPKYQG VSLDELEILR VVYGIFPTYR NSPLPAAFDR VLQFGDASGI 401: QSPVSFGGFG SLTRHLGRLS NGIYDAIDGD LLDSDSLSKL NPYMPNLSAS WLFQRAMSAK QQLDVSRGFT NELLHVNFSC MQRLGDPVLR PFLQDIIQFG 501: PLAKTLGLVM LTKPQIIPSI FRQVGIPVLL DWSVHFFMLG LYTLLSAYID PLLRPSLEGL PSKTRFEWKR CLEAWKYGAG LDYEL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)