suba logo
AT2G31310.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : LOB domain-containing protein 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 14 (LBD14); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: lateral organ boundaries-domain 29 (TAIR:AT3G58190.1); Has 1007 Blast hits to 1003 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1007; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTA1eggNOG:ENOG411081VEMBL:AB473850EMBL:AC006593
EMBL:CP002685EnsemblPlants:AT2G31310EnsemblPlants:AT2G31310.1entrez:817689
GeneID:817689Gramene:AT2G31310.1hmmpanther:PTHR31529hmmpanther:PTHR31529:SF4
HOGENOM:HOG000237548InParanoid:Q9SJW5InterPro:IPR004883KEGG:ath:AT2G31310
ncoils:CoilOMA:FCYEEGSPaxDb:Q9SJW5Pfam:PF03195
Pfam:Q9SJW5Pfscan:PS50891PhylomeDB:Q9SJW5PIR:B84719
PRIDE:Q9SJW5PRO:PR:Q9SJW5PROSITE:PS50891Proteomes:UP000006548
RefSeq:NP_180689.1TAIR:AT2G31310tair10-symbols:LBD14UniGene:At.52992
UniProt:Q9SJW5
Coordinates (TAIR10) chr2:+:13352985..13353653
Molecular Weight (calculated) 21303.90 Da
IEP (calculated) 5.81
GRAVY (calculated) -0.52
Length 188 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGLGSPCGG CKFLRRKCVE GCVFAPYFCY EEGSSNFAAI HKVFGASNFS KLISHLPDHD RCDAVRTISY EAHSRLHDPI YGCVSQIFSL QQQVVSLQAQ
101: VVLLREEASR RFPQDDPGCN MKQQEKVLAQ QMPQDLHNWF HQGILDSDFD PMSGTTRDNE RSMDHNESPC SSNESLNYYQ EVNFPWSV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)