AT2G30550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : alpha/beta-Hydrolases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a lipase that hydrolyzes phosphatidylcholine, glycolipids as well as triacylglycerols. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: galactolipase activity, triglyceride lipase activity, phospholipase A1 activity; INVOLVED IN: lipid metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, class 3 (InterPro:IPR002921); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G06800.2); Has 1565 Blast hits to 1557 proteins in 299 species: Archae - 0; Bacteria - 279; Metazoa - 58; Fungi - 305; Plants - 673; Viruses - 3; Other Eukaryotes - 247 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:13014884..13016278 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52804.70 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||
| Length | 464 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAIPSHNNL LTINHKNSIT GSSSLNTNFS EINFPAKFRV ATRALSRTDE SSLSAVISRL ERERRERQGL LIEEAEGAGE LWMTAEDIRR RDKKTEEERR 101: LRDTWRKIQG EDDWAGLMDP MDPILRSELI RYGEMAQACY DAFDFDPASK YCGTSRFTRL EFFDSLGMID SGYEVARYLY ATSNINLPNF FSKSRWSKVW 201: SKNANWMGYV AVSDDETSRN RLGRRDIAIA WRGTVTKLEW IADLKDYLKP VTENKIRCPD PAVKVESGFL DLYTDKDTTC KFARFSAREQ ILTEVKRLVE 301: EHGDDDDSDL SITVTGHSLG GALAILSAYD IAEMRLNRSK KGKVIPVTVL TYGGPRVGNV RFRERMEELG VKVMRVVNVH DVVPKSPGLF LNESRPHALM 401: KIAEGLPWCY SHVGEELALD HQNSPFLKPS VDVSTAHNLE AMLHLLDGYV SFLFYFSLFI YSCS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)