AT2G28460.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.702 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT5G48320.1); Has 1625 Blast hits to 656 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 1622; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:12166655..12168817 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82909.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.33 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||
| Length | 720 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSKTESKLL SLTSQIMSPA KQIRFDLDWV GEKRMNSFIT KVMSLVSSMD LDLQPKPESE FMSLTTQIFS LLHSMDSDSM PKPLSNLISL LSQGNFDHNT 101: DFRLFFRQTM ALEPEPIFMS LIYQIFSLVI SMNTKRDKLI SLCPQACVVL GNNGNFEVIV KKQEGQAHKG KAIPWSRDSK WECLPFNWKT YWSSGDDVTH 201: FRCRNCDGDN HKEYEKAPVE IKHSLHRKHS LQLVLLDESS YTRVCYCCDE DLKRMFYYCR TCDFGLNFVC AKKEAILYID QPKWHEHTLA LFLRKTSLTC 301: NACGLSHSSC PLYMCPPCDF VIHKSCISLP RLIRISRHFH RIAYTPSFDE GDWSCSVCRK KIDNDYGGYV CTKGCSYAAH SKCATQSNVW DGIELEGEPE 401: DIEEEVLPPF LEISDGIIQH FSHQQHHMKL DENTGRDYDE NKECEACIRP IYFGNFYSCL ECDFILHEEC ANLSRKIHHP IHPHLLNLIG GFDGVINYYN 501: DKCSACIGLC KGGFFYECGK QGCKFMLHVQ CATTSEPLVH ESHRHPLFLT SKPGEKIRCS VCKDSEETFN CIECDFALCF YCAILPQKVR YKHDKHTLTL 601: SYGKETGTSW CEVCEAKINL KGRFYMCNEY CCVTLHIKCT LGDLHMRPGS TWITFGNKVD VLHNSNRMSR SICSYCVKHC PYKIVYMCSG LILCSQGCVV 701: RSILQKRGRY RELEFLSRYA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)