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AT2G25480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
cytosol 0.000
ASURE: cytoskeleton,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.2); Has 2143 Blast hits to 1757 proteins in 233 species: Archae - 0; Bacteria - 125; Metazoa - 980; Fungi - 165; Plants - 356; Viruses - 3; Other Eukaryotes - 514 (source: NCBI BLink).
Protein Annotations
EMBL:AC006300EMBL:AK227768EMBL:CP002685EnsemblPlants:AT2G25480
EnsemblPlants:AT2G25480.1entrez:817086GeneID:817086GO:GO:0005737
GO:GO:0005874Gramene:AT2G25480.1hmmpanther:PTHR31358hmmpanther:PTHR31358:SF10
InterPro:IPR027329KEGG:ath:AT2G25480ncoils:CoilOMA:RNESHMV
Pfam:PF06886PhylomeDB:Q0WSZ8Proteomes:UP000006548RefSeq:NP_180118.2
TAIR:AT2G25480UniGene:At.39014UniProt:Q0WSZ8
Coordinates (TAIR10) chr2:+:10843449..10845343
Molecular Weight (calculated) 44345.70 Da
IEP (calculated) 9.40
GRAVY (calculated) -1.17
Length 403 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSESVVAAD GADCAIANGE VTMEGDSSNG NGGTSENLEC CSTQHPMEAS EGTQNEQVDD SKQMRGQKVQ GRVKHEKTSG GKNIPSVLVK KKKDGKVVAS
101: NGSVAPNVKP VKSPKSKSLN GREAHVTKHG NHDSLPAEGT RDKPKLRETR KQVNDTSEDD TQYPKEDDGK PRRASALPNY GFSFRCDQRA EKRREFYSKL
201: EEKIHAKEEE KNTVQAKSKE TQEAELKMLR KSLNFKATPM PTFYQEPQLP KTELKKIAIT RPKSPKLGRK KTNSRADSEE AITIQTPRFG RLSLDEKTPK
301: DNPVVEGSVP GETKKPPVRK SLPRLPSEKT NLSNGKVAPA KAVTASTKAK SERKKPDKDV DDLSQSSPVD DNADPEDSQE QAPRVNEDRN ESHMVVEVVA
401: VEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)