AT2G24440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : selenium binding | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
selenium binding; FUNCTIONS IN: selenium binding; INVOLVED IN: cell redox homeostasis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Selenoprotein, Rdx type (InterPro:IPR011893); BEST Arabidopsis thaliana protein match is: selenium binding (TAIR:AT4G31360.1); Has 1421 Blast hits to 981 proteins in 155 species: Archae - 2; Bacteria - 33; Metazoa - 566; Fungi - 103; Plants - 97; Viruses - 1; Other Eukaryotes - 619 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:10391124..10392492 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20713.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||||||||||
| Length | 183 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASKKVDGEG KGKAIANTRM LRSMDRKTRS DTKRDGSSSK LMKIESPEKK KRKTTKAKNV GAAKKKVKKE EVAVKIEKEE EEDDDAAEKE EDDDSDKKKI 101: VIEHCKQCKS FKERANEVKE GLEEAVPGII VTVNPDKPRR GCFEIREEGG ETFISLLAMK RPFTPMKELN MEEVIADIVE KIK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)