AT2G23180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.957 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cytochrome P450, family 96, subfamily A, polypeptide 1 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of CYP96A | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cytochrome P450, family 96, subfamily A, polypeptide 1 (CYP96A1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 96, subfamily A, polypeptide 9 (TAIR:AT4G39480.1); Has 27906 Blast hits to 27823 proteins in 1447 species: Archae - 44; Bacteria - 2407; Metazoa - 10493; Fungi - 6010; Plants - 7891; Viruses - 3; Other Eukaryotes - 1058 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:9874953..9876503 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58863.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.73 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 516 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALITLLEVS ISLLFFSFLY GYFLISKKPH RSFLTNWPFL GMLPGLLVEI PRVYDFVTEL LEASNLTYPF KGPCFGGLDM LITVDPANIH HIMSSNFANY 101: PKGTEFKKIF DVLGDGIFNA DSELWKDLRK SAQSMMTHQD FQRFTLRTIM SKLEKGLVPL LDYVAEKKQV VDLQDVFQRF TFDTSFVLAT GVDPGCLSTE 201: MPQIEFARAL DEAEEAIFFR HVKPEIVWKM QRFIGFGDEL KMKKAHSTFD RVCSKCIASK RDEITNGVIN IDSSSKDLLM CYMNVDTICH TTKYKLLNPS 301: DDKFLRDMIL SFMLAGRDTT SSALTWFFWL LSKNPKAITK IRQEINTQLS PRTNDFDSFN AQELNKLVYV HGALCEALRL YPPVPFQHKS PTKSDVLPSG 401: HRVDASSKIV FCLYSLGRMK SVWGEDASEF KPERWISESG RLIHVPSFKF LSFNAGPRTC LGKEVAMTQM KTVAVKIIQN YEIKVVEGHK IEPVPSIILH 501: MKHGLKVTVT KRSNLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)