AT2G20410.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.938 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA-binding ASCH domain protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA-binding ASCH domain protein; CONTAINS InterPro DOMAIN/s: ASCH domain (InterPro:IPR007374); Has 281 Blast hits to 281 proteins in 129 species: Archae - 2; Bacteria - 93; Metazoa - 106; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 42 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:8802561..8804194 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 37570.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.47 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.54 | ||||||||||||||||||||||||
| Length | 339 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRGNYKNPC LTMHQPWASL LVHGIKRIEG RSWPSPIRGR LWIHAASKVP DEATIKAMEE FYQQIYAVDG ITDIQFPQHY PVSRLIGCVE VVGCVTSDEL 101: QNWDALPQGV RLEGQTNFCW LCEKPQKLII PFEMRGYQGV YNLENKIYVA AARGLMPSQN SFKVKFPLPD PKDPFSLKPG SIPCTMQEKK ELDSKQVTSL 201: TAAIKQVTSL TAAIAGAKAA ATQFSKKGQS LQTNNIFDYT TRSKSKVIED EAAESLDNPV LGSGGTSDRT YRTRSKNRGT QMGEEVCSES SNSSSKVESS 301: QRSAVTKSED RNTRIGERRF DPGSARIMAA AIRNLKPPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)