suba logo
AT2G17787.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35940.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J4CQeggNOG:ENOG410ZMW4EMBL:AK228038EMBL:BT028927
EMBL:CP002685EnsemblPlants:AT2G17787EnsemblPlants:AT2G17787.1entrez:2745546
GeneID:2745546Gramene:AT2G17787.1hmmpanther:PTHR34660hmmpanther:PTHR34660:SF1
KEGG:ath:AT2G17787ncoils:CoilOMA:VWPTARFPhylomeDB:Q0WS99
Proteomes:UP000006548RefSeq:NP_973482.1TAIR:AT2G17787UniGene:At.47807
UniProt:Q0WS99
Coordinates (TAIR10) chr2:+:7731374..7732853
Molecular Weight (calculated) 36844.40 Da
IEP (calculated) 9.60
GRAVY (calculated) -1.12
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRCYPFPPP GYVWKESLIE SIKGAKEEVK KDRKHKRNEK DRKDRDNEAG RSRKHRHKRR RKDEGAIASG KLVSSEVELL EKSCQTVELE LQTSSQNSCD
101: STLHSNERPK QIQSQPLDET SIRTRLPDKG QEDPEDGVMM TSKDQKQRFS REMLDASQAA TAPNESVGHS RVCQEKRIDP TFGSSREITT KLNKEKKSVP
201: SKDNRKVSKE KKMPSLSSCN PLEQEKPTSS HQETPGPSKL LCRKCPPSMA GQLLNLIENW APDRVESKLT DSEDQEWWLF IKFGAKSPQV SNQKTNQGSS
301: SMVWPTARFL PEAEVHALPF TVPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)