AT2G17033.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
|
||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||
| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Smr protein/MutS2 C-terminal (InterPro:IPR002625); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G48730.1); Has 2021 Blast hits to 1571 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 2004; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr2:+:7401205..7403207 | ||||||||||||
| Molecular Weight (calculated) | 56473.30 Da | ||||||||||||
| IEP (calculated) | 9.26 | ||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||
| Length | 504 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAALIQTIHG VVVTRTLTLV YPSTFTSRHK ALNQMTSSSN SGLRRFLFTP PQRLSQGICY WGAELSNNVS WTYKTKMVVR SKAGAVPLMK HGDRFLSSLS 101: SPALAGDPSA INRHIKKFVA ASPKSVALNV LSHLLSDQTS HPHLSFFALS LYSEITEASW FDWNPKLIAE LIALLNKQER FDESETLLST AVSRLKSNER 201: DFTLFLCNLV ESNSKQGSIQ GFSEASFRLR EIIQRSSSVY VKTQAYKSMV SGLCNMDQPH DAERVIEEMR MEKIKPGLFE YKSVLYGYGR LGLFDDMNRV 301: VHRMGTEGHK IDTVCSNMVL SSYGAHDALP QMGSWLQKLK GFNVPFSIRT YNSVLNSCPT IISMLKDLDS CPVSLSELRT FLNEDEALLV HELTQSSVLD 401: EAIEWNAVEG KLDLHGMHLS SSYLILLQWM DETRLRFSEE KCVIPAEIVV VSGSGKHSNV RGESPVKALV KKIMVRTGSP MRIDRKNVGS FIAKGKTVKE 501: WLCK |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)