AT2G16660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; INVOLVED IN: response to karrikin; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT4G34950.1); Has 3381 Blast hits to 3270 proteins in 872 species: Archae - 26; Bacteria - 1620; Metazoa - 6; Fungi - 314; Plants - 598; Viruses - 0; Other Eukaryotes - 817 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:7218930..7221592 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58980.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.22 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||
| Length | 546 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFQRSISSS SALKWLGFVT AVWVQSISGN NYTFSNYSGA LKSLMNLNQL ELNNLSVAKD VGKAFGILAG LASDRLPTPV ILLIGCFEGL LGYGVQWLVV 101: SRTIQPIPYW QMCIFLCMGG NSTTWMNTAV LVTCIRNFRR NRGPVSGILK GYVGLSTAIF TDLCTALFSN DPASFLVLLA VVPFAVCLTA VFFLREIPPA 201: SSAAEENEET RYFTIFNIVA VVVAVYLQSY DIIGIKTGVF SVAFASILLF LLASPIAIPF HSFIKSLNYG EQDDLEGRIQ EPLLRSEIAA AEKEVIVVAA 301: VAAEEEEKKR KKPVLGEDHT IMEAVLTVDF WVLFVSFLCG VGTGLAVMNN MGQIGLALGY TNVSIFVSMT SIWGFFGRIL SGTLSEYFLK KAGTPRPLWN 401: AASQILMAVG YILMALAVPN SLYIGSMVVG VCYGVRLAIT VPTASELFGL KYYGLIYNIL VLNLPLGSFL FSGLLAGFLY DAEATPTPGG GNTCVGAHCY 501: RLIFIVMALA SVIGVGLDLV LAYRTKEIYA KIHASKKSKK SGGSLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)