AT2G07715.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding, OB-fold-like protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: mitochondrion, ribosome, intracellular, large ribosomal subunit; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Ribosomal Proteins L2, RNA binding domain (InterPro:IPR022666), Ribosomal protein L2 (InterPro:IPR002171); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:ATMG00560.1); Has 8618 Blast hits to 8616 proteins in 3083 species: Archae - 0; Bacteria - 5492; Metazoa - 11; Fungi - 129; Plants - 1005; Viruses - 0; Other Eukaryotes - 1981 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:3411180..3412694 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42488.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.75 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRPGRARALR QFTLSTGKSA GRNSSGRITV FHRGGGSKRL LRRIDLKRST SSMGIVESIE YDPNRSSQIA PVRWIKGGCQ KKMNTIEKFA PPRKILEPTT 101: NTISGLFSFS FLPGKVDKRK VACFSPGLMA AYVVVGLPTG MPPLSSSKSA FASKGAGSTK TLVKDVFFSA FSSLKAKRET ASLAFASSFG FPRIAVAGAK 201: PAFFAPRMRQ KVRGKSTFSL CEVQKGRTHS ILWAHRIKGK AGLSWQSFRR QDTLGLVGAA GHKKSKPKTD QGNLPAKPIG ERAKQLKALR GLRAKDGACK 301: VDLTREERSN GKAIRPFGSS RSIAHIQISY LIGERGNTHE APTEREGLPG RMPMGAGFFE KARADSETWD LGLATNEYFS SSFLRQRLM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)