AT2G03740.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.641 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : late embryogenesis abundant domain-containing protein / LEA domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
late embryogenesis abundant domain-containing protein / LEA domain-containing protein; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant protein (LEA) family protein (TAIR:AT2G03850.1); Has 1140 Blast hits to 576 proteins in 184 species: Archae - 2; Bacteria - 341; Metazoa - 46; Fungi - 35; Plants - 656; Viruses - 0; Other Eukaryotes - 60 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:1142941..1143917 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 20017.60 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.70 | ||||||||||||||||||||||||||||
| Length | 189 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSISGAVLSG LGPSFLISGG KRSGVGGGAM KVGRKNVIIA PQRKKSWVSA AVKGAGNSPN DPKWLDDASE KASGYVKEKG SEVGNVSAQK GQELQNQMER 101: AKDYIFGKAG EAMDSVAENA KRASDFVTEK GKEVKEETTS RTDKAKDFIV EKAGDVKDTA MDMRNKTSKY VGDKATEAKE AILPPKTDA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)