AT2G03060.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AGAMOUS-like 30 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 94 (TAIR:AT1G69540.1); Has 5791 Blast hits to 5791 proteins in 704 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 306; Plants - 4796; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:901614..903639 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37594.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||
| Length | 332 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RRCFSFESSE LEENFPKVGS RCKYTRIYSL KDLSTQARIL 101: QARISEIHGR LSYWTEPDKI NNVEHLGQLE ISIRQSLDQL RAHKMQDGIQ IPLEQQLQSM SWILNSNTTN IVTEEHNSIP QREVECSASS SFGSYPGYFG 201: TGKSPEMTIP GQETSFLDEL NTGQLKQDTS SQQQFTNNNN ITAYNPNLHN DMNHHQTLPP PPLPLTLPHA QVYIPMNQRE YHMNGFFEAP PPDSSAYNDN 301: TNQTRFGSSS SSLPCSISMF DEYLFSQMQQ PN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)