AT2G02820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : myb domain protein 88 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative transcription factor (MYB88), involved in stomata development, double loss of MYB88 and FLP (MYB124) activity results in a failure of guard mother cells (GMCs) to adopt the guard cell fate, thus they continue to divide resulting in abnormal stomata consisting of clusters of numerous guard cell-like cells. This phenotype is enhanced in double mutants over the single mutant flp phenotype. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
myb domain protein 88 (MYB88); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT1G14350.2); Has 8359 Blast hits to 7654 proteins in 549 species: Archae - 0; Bacteria - 2; Metazoa - 785; Fungi - 539; Plants - 5060; Viruses - 3; Other Eukaryotes - 1970 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:804890..807139 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51341.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.39 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEETTKQNNM KKKKKILLHS DDSKKKERHI VTWSPEEDDI LRKQISLQGT ENWAIIASKF NDKSTRQCRR RWYTYLNSDF KRGGWSPEED TLLCEAQRLF 101: GNRWTEIAKV VSGRTDNAVK NRFTTLCKKR AKHEAMAKEN RIACCVNSDN KRLLFPDGIS TPLKAESESP LTKKMRRSHI PNLTEIKSYG DRSHIKVEST 201: MNQQRRHPFS VVAHNATSSD GTEEQKQIGN VKESDGEDKS NQEVFLKKDD SKVTALMQQA ELLSSLAQKV NADNTDQSME NAWKVLQDFL NKSKENDLFR 301: YGIPDIDFQL DEFKDLVEDL RSSNEDSQSS WRQPDLHDSP ASSEYSSGSG SGSTIMTHPS GDKTQQLMSD TQTTSHQQNG GELLQDNGIV SDATVEQVGL 401: LSTGHDVLKN SNETVPIPGE EEFNSPVQVT PLFRSLAAGI PSPQFSESVS IHLTN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)