AT1G80260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Spc97 / Spc98 family of spindle pole body (SBP) component | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 1427 (emb1427); FUNCTIONS IN: tubulin binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: spindle pole, microtubule organizing center; CONTAINS InterPro DOMAIN/s: Spc97/Spc98 (InterPro:IPR007259); BEST Arabidopsis thaliana protein match is: Spc97 / Spc98 family of spindle pole body (SBP) component (TAIR:AT1G20570.1); Has 1146 Blast hits to 1005 proteins in 166 species: Archae - 0; Bacteria - 0; Metazoa - 591; Fungi - 250; Plants - 182; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:30175924..30180511 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 111446.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.08 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||||||||||
| Length | 995 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLLRADQT LIPGAMCSRR VWTHSELALP SVSVTELDLV RGLLQALQGL SSPFLFWDQT GQTFRAKSHI RVSHLSHSSL HVLLAGFLYP ATCLKLVESI 101: VAAINTSLRS PPTLMAFSDS VSAWLERLRD IALKEEVMID NSDITVTPTL LGLTSSLSSL CSGAEYLLQV VHGAIPHTFF DSNSTISAAE IAVHVLDYLY 201: KKLDEVCLVQ GGEVEGFHML LQMFAGSLLP YIEGLDSWLF EGTLDDPCEE LFFTANQSVS VDDAEFWEKS YQLMKVPNSK SNVTSLNEKK VMSGHDANSS 301: LASDKDKEQN TRVLCPLFIK DICKSIVSAG KSLQLMQHIP STSSENSGKT QFHGRNGYGK SSVGSLLTKM SSCSSTADLS LSEVFCLTLA GLIGHGDHVS 401: RYLWKDEADE WEISPTLASY ISGELVNDMD NKDLPVLTCS ERMWYKLLVG AVQEKRAMEA KSELQSACYA TGVKDGNSGL TAQKALQGLF CNENLVVSVS 501: KMDLERNRNA WNVLNLSQNY CLPSLNDESL LSAVFEESGM ADAGLSGTNY KFGFQFGRSE YISSQDDTNL LETLFPFPTL LPSFQPKLHL SEFLPFQKNS 601: TLPSRVLSWL LKAEPMDTRL PVVIMQECFT IYIRRQVDYI GKVILSKLMN DWKLMHELAV LRAIYLLGSG DLLQHFLTVI FDRLGKGESS NDDFELNIIL 701: QESIRNSADA MLLSSPDSLV VSISREDRDK DDKGDIIPLS STRKSRVNSF GIDCLESLKF TYKVPWPLEL IANSEAIKKY NQVMGFLLKV KRAKYVLDKA 801: RRWMWKGKGS ATKIRKHHWL LEQKLLNFVD AFHQYVMDRV YHTAWRELCE AMVKAGSLDE VIYVHETYLL SIQRQCFVVQ EKLWAIIASR INMILGLALE 901: FYSIQQTLSS GGAVSAIKAR CEMEIDRIEK QFEDCIAFLL RVLSSKLNVG HFPHLADLVT RINYNYHYMS DTGSLMTTSG AETNSSRPWT AKSDV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)