AT1G78990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.964 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : HXXXD-type acyl-transferase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
HXXXD-type acyl-transferase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Transferase (InterPro:IPR003480); BEST Arabidopsis thaliana protein match is: HXXXD-type acyl-transferase family protein (TAIR:AT1G32910.1); Has 2253 Blast hits to 2240 proteins in 120 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 21; Plants - 2228; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29713531..29714969 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50917.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.79 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 455 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGEAAEQARG FHVTTTRKQV ITAALPLQDH WLPLSNLDLL LPPLNVHVCF CYKKPLHFTN TVAYETLKTA LAETLVSYYA FAGELVTNPT GEPEILCNNR 101: GVDFVEAGAD VELRELNLYD PDESIAKLVP IKKHGVIAIQ VTQLKCGSIV VGCTFDHRVA DAYSMNMFLL SWAEISRSDV PISCVPSFRR SLLNPRRPLV 201: MDPSIDQIYM PVTSLPPPQE TTNPENLLAS RIYYIKANAL QELQTLASSS KNGKRTKLES FSAFLWKLVA EHAAKDPVPI KTSKLGIVVD GRRRLMEKEN 301: NTYFGNVLSV PFGGQRIDDL ISKPLSWVTE EVHRFLKKSV TKEHFLNLID WVETCRPTPA VSRIYSVGSD DGPAFVVSSG RSFPVNQVDF GWGSPVFGSY 401: HFPWGGSAGY VMPMPSSVDD RDWMVYLHLT KGQLRFIEEE ASHVLKPIDN DYLKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)