AT1G77320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transcription coactivators | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Mutant is defective in meiosis and produces abnormal microspores. Encodes a BRCT-domain-containing protein that could be specific to the meiotic cell cycle and that plays a crucial role in some DNA repair events independent of SPO11 DSB recombination repair. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
meiosis defective 1 (MEI1); FUNCTIONS IN: transcription coactivator activity; INVOLVED IN: female meiosis, reciprocal meiotic recombination, response to DNA damage stimulus, male meiosis; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: BRCT (InterPro:IPR001357); BEST Arabidopsis thaliana protein match is: BRCT domain-containing DNA repair protein (TAIR:AT3G43930.2); Has 1189 Blast hits to 732 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 465; Fungi - 465; Plants - 183; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29056740..29062710 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108022.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.05 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 972 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKTTQLFKGA NVFMSRNLVP PEVFDTLLDA FKLNGAEIFL CCDPSRSGPS DFHVIASPDH EKFKDLKAKG CNLIGPQCAL FCAKEGRPLP QRGFTCCLAM 101: DGLKVLASGF LVDEKVKIKE LVTSMGGVLL SRASSDVNFV IVKNVLAAKY KWALNKKPIV TLNWLHRCWN EHRVVPQEPY KIPPFSGLTI CVTRIPADER 201: KGMEKVISEY GGSYSAELTK SCTHLIADAA EGDKYKVARK WGHIQIVTRK WFQQSIDKKV CLNEESYPVL GSIPLTRGVR DLGVHNGLEK FPSAATASAA 301: DSYVSCAQSR DSDIEASASQ NVFPTSMNPS TDVKEPGGGP TARPQEQNID GCTARDSESE DNDLYLSDCR IFLLGFEASE MRKLAKLVRR GGGSRYMLLN 401: ERMTHIVVGT PSESEKREAR SVAASGVIQV VIPSWLEDCD REKKEIPVHN IYTANHLILP RDSACLTKGS FARMSSMEQT KNTHDQTMVY DSSSRSINVS 501: NGPATLLGKN KEAMQEFGRK DEIHTGRKIV SPTQKETLIS LVTCESKEQR SIQCEFSGQN DQERKSSVFK GETFCFSHSF PEDRRPQIVE WVNQGGGEVV 601: NDPLINNAHF TIECHGGFQS TETTQTIYVS SHWVRNCLKV GCLLAVSSHI LYSPLPCQTP LPGFESLCIC SSQHNEKNVE LLRNLSVVLG ADFVERLTRK 701: VTHLICNFAK GDKYVRASKW GIISVTPDWL YECVRQNQVV CTDNFHPREL TTQDREAGSQ FHTQFVPMAS RDSMSLPVSH SEDREKIQSF AGKSGCGKGE 801: VYNRLGEIGK EQTFPSKKAK LLRDGQESDV FPVRELPSNC DRPSHSGDGI VTGYDVASGR EVPDVADTIE DLLEQTSKIQ DQKSPGRILE KTHFSTSEQY 901: NTGNHSVTGL SRHWINRVHK NDDMGSPPGD ATTDTYGNFS ETQTESQVVG YEEDLSGRQM LIDRVRTRSS LT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)