AT1G76980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BEST Arabidopsis thaliana protein match is: embryo defective 2170 (TAIR:AT1G21390.1); Has 65 Blast hits to 65 proteins in 23 species: Archae - 0; Bacteria - 8; Metazoa - 1; Fungi - 8; Plants - 40; Viruses - 3; Other Eukaryotes - 5 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28926466..28927242 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 29243.40 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.41 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.88 | ||||||||||||||||||||||||
| Length | 258 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIFDLSSKS FDSHLNFPRT FDDHSDSGVC SPPLWRTSPP KSPAHLHNNY QNLSPVTKAQ VIARGQRELM DMVSKMPESC YELSLKDLVE VNTEEEKVFD 101: EMPQREKKPR KVVRKTKSDK WVDPIRNGGV NNSGFLLKLV FPVSLGAKKK TNKKKDNDDD DSSVTSKRSW ISSPRPSISD LSMKREDKDW WKDGLSESRR 201: SQSVVSRINS GSSKSSGGSS SRSNSDRSRN SLRYPQTLAN LFRNPLRCFA SSSRICFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)