AT1G76050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pseudouridine synthase family protein | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: shoot, leaf lamina base, stem, embryo, leaf whorl; EXPRESSED DURING: D bilateral stage; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase, RsuA and RluB/C/D/E/F (InterPro:IPR006145), Pseudouridine synthase, RluC/RluD, conserved site (InterPro:IPR006224), RNA-binding S4 (InterPro:IPR002942); Has 15192 Blast hits to 15192 proteins in 2580 species: Archae - 12; Bacteria - 11504; Metazoa - 97; Fungi - 82; Plants - 90; Viruses - 0; Other Eukaryotes - 3407 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28540858..28542019 | ||||||||||||
| Molecular Weight (calculated) | 33857.20 Da | ||||||||||||
| IEP (calculated) | 7.15 | ||||||||||||
| GRAVY (calculated) | -0.20 | ||||||||||||
| Length | 313 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSISQLPSF SLTTAKSLRY PSSPSSSLSI FFSFFPKVSN FVRASSGIPN LVACSPTEII IPRVNNAGLR IEEIVDAAKG KIRLDSWISS RINGVSRARV 101: QSSIRLGLVT VNGRVVDKVS HNVKSGDEVN CTISELQPLK AEAEDIPLDI VYEDKHVLVV NKPAHMVVHP APGNPTGTLV NGILHHCSLP CVDYSNSEED 201: DDSDEETFSD DEEMTTSPSS YAASVRPGIV HRLDKGTTGL LVVAKDEHSH AHLAEQFKLH TIERVYVSLT TGVPSPPQGR IEIPIGRDSS NRIRMAAIPG 301: GVRGGRARHA ASR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)