AT1G73440.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : calmodulin-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
calmodulin-related; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248), Ubiquitin interacting motif (InterPro:IPR003903); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT4G00140.1); Has 2048 Blast hits to 2029 proteins in 336 species: Archae - 0; Bacteria - 7; Metazoa - 605; Fungi - 146; Plants - 781; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:27611418..27612182 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 28254.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.71 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.91 | ||||||||||||||||||||||||||||||||||||
| Length | 254 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARGESEGES SGSERESSSS SSGNESEPTK GTISKYEKQR LSRIAENKAR LDALGISKAA KALLSPSPVS KKRRVKRNSG EEDDDYTPVI ADGDGDEDDD 101: EVEEIDEDEE FLCKRKNKSS ASKRKVSSRK ILNTSVSLGE DDDDLDKAIA LSLQGSVAGS DKEAATMKKK RPELMSKTQM TQDELVMYFC QFDEGGKGFI 201: TLRDVAKMAT VHDFTWTEEE LQDMIRCFDM DKDGKLSLDE FRKIVSRCRM LKGS |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)