AT1G68080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, L-ascorbic acid binding; INVOLVED IN: oxidation reduction; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620); Has 25 Blast hits to 25 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 17; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:25517530..25519240 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43894.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.16 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 389 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSEKEHPRLI LHNFLSPAEC KELELIHKSS STIGYRPNVF STTLSHLIAT NSPHLIIPFV SIRERLKEKI EETFGCEYEL FIEFTGLISW CKGASIGWHS 101: DDNRSYLKQR DFAAVCYLNS YEKDFIGGLF RFQSGEPVTV APSAGDVIMY TADDRNIHSV DEVTDGERLT LALWFSRDSS HDEDSKLLSR LSQCTSHEVC 201: LPLPASTNMY WFCPHQDGSN QNIGFDVCVA RLHLLGFDVH SLQGEDHSTD ASEQLMGPLQ LAKGGKLLTR KFANILHALQ VVQFYHWKAS ELVTSNVEND 301: TLEEVKAMSH SQLETINALK SVFLLDENLV ATTFGYSCSG EDRKDSLDLT GIALAVTSWE EYSCKLLKEL LSSLPQWKTY QTIHKVESD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)