AT1G66660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.944 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein with RING/U-box and TRAF-like domains | ||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT1G66650.1); Has 1318 Blast hits to 1315 proteins in 668 species: Archae - 0; Bacteria - 0; Metazoa - 882; Fungi - 0; Plants - 429; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24862056..24863028 | ||||||||||||
| Molecular Weight (calculated) | 25540.20 Da | ||||||||||||
| IEP (calculated) | 8.79 | ||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||
| Length | 224 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSIVLLVVN HSRDQSIRCN IGDIRCRAME KVIEASIVPC PNAKHGCKET TTYCNQSSHE KVCKFVRCSC PVSNCNYVSS YSNLKSHACS TAHVWGEDDI 101: HFQLVIDRPR IFNMNLGRKK TVVFKEEKEG DLIVVQAFKG LEGVYVTVNR IAHMAPGIRD LSCSLAKLNE YSTLRSGSLV KKIQKVREKM HLEDDLMWIP 201: PKMLSGDHWK MQICIAYGYK FIHI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)