AT1G63540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G63530.1); Has 23394 Blast hits to 12215 proteins in 815 species: Archae - 17; Bacteria - 3216; Metazoa - 8302; Fungi - 5746; Plants - 1148; Viruses - 308; Other Eukaryotes - 4657 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:23567495..23569495 | ||||||||||||||||||||
| Molecular Weight (calculated) | 64110.30 Da | ||||||||||||||||||||
| IEP (calculated) | 6.36 | ||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||
| Length | 635 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKIDFSEPEC SNCYQFTNPD LLNTPESEQS NVIGSSITSV PVNDGPVPPL ELDSAAVVST STSSPVQALG HDSGATVSTS TSSPVQIFSS PFSFGSAHAA 101: ITPVSSGPAP SPTFGEPRIL LATSGSGASA TSTSSTSSPL HSSSPFSFGS APAAITSVSS GPAQSPASSP RLWIDRFATS SSASATSSSS TSSPFHSSSL 201: LGFAPAVTSV SSAPTPACGP TQAFGQPTQA FGLSMFGSTP RFEITGFPFQ ASASRNSPSP SFGPAHNCGK PAFGSPFGNN VAFARPDVGI SPVASSSTST 301: EIFGATPASL FSPFGPMQAP VQASASSTST FPPFGCVPPS PSSGSSLFNS AFGSLPAPSS SNFFGQSSSN LLGQNPSTTG VGYLPGSPLN SSFPGFGVGY 401: LPGSSSNLFR SNPPNFGGGS IGAGPQHFGF NGDASVLPST PFSLSPAFSS NTNTGSYPFA SHEWSRPTEQ GSMNPGYAPT HEGDNSSGWS FPTSKGNIYI 501: SISASKPYLH KSHEELRWED YKQGDKGGPF PAAPASTIGS RPNAAFSPPT VSPPAHGCTA CGATSSSSAS RHFTFNGATS PPSAATTPPG LFFPSTGFAP 601: MMFGTNLAVQ GTSPALQAYP VQGYILLPFA AMTLQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)