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AT1G63250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G07750.1); Has 39480 Blast hits to 38845 proteins in 2963 species: Archae - 566; Bacteria - 19506; Metazoa - 5817; Fungi - 4606; Plants - 2531; Viruses - 8; Other Eukaryotes - 6446 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-829-MONOMEREC:3.6.4.13eggNOG:COG0513eggNOG:KOG0342
EMBL:AC022355EMBL:CP002684EnsemblPlants:AT1G63250EnsemblPlants:AT1G63250.1
entrez:842631Gene3D:3.40.50.300GeneID:842631Genevisible:Q9C8S9
GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT1G63250.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF324HOGENOM:HOG000268799InParanoid:Q9C8S9
IntAct:Q9C8S9InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001
InterPro:IPR014014InterPro:IPR027417iPTMnet:Q9C8S9KEGG:ath:AT1G63250
ncoils:CoilOMA:FWNENDGPaxDb:Q9C8S9Pfam:PF00270
Pfam:PF00271Pfam:Q9C8S9Pfscan:PS51192Pfscan:PS51194
Pfscan:PS51195PhylomeDB:Q9C8S9PIR:C96658PRIDE:Q9C8S9
PRO:PR:Q9C8S9PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195
ProteinModelPortal:Q9C8S9Proteomes:UP000006548RefSeq:NP_176514.1SMART:SM00487
SMART:SM00490SMR:Q9C8S9STRING:3702.AT1G63250.1SUPFAM:SSF52540
TAIR:AT1G63250UniGene:At.36158UniGene:At.52694UniProt:Q9C8S9
Coordinates (TAIR10) chr1:-:23463284..23466451
Molecular Weight (calculated) 89595.80 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.54
Length 798 amino acids
Sequence (TAIR10)
(BLAST)
001: MYSLILRERS GSITGSLWNR ISSRNMGGGP RTFPGGLNKW QWKRMHEKKA REKENKLLDQ EKQLYEARIR TEIRAKMWGN PDSGEKTAKS KQSHGPMSPK
101: EHIKTLADRF MKAGAEDFWN ENDGPVKKSD QGSRSGSDSI DSTSNSPIDV RRLVSATCDS MGKNRVFGSS RRGFSSMSRF KRNESSCDEG DDFDAKKLDT
201: LSPFSPKFAG TKEKVKSSRS VVGVIRNKGL FGRRKFRKND SSTEEDSDEE GDEGKMIGWM DMRKTGSSAS LGNHDIKLTK RVNRNVTDEE LYPPLDINTV
301: REDLSKRKSV DNVMEEKQEP HDSIYSAKRF DESCISPLTL KALSASGILK MTRVQDATLS ECLDGKDALV KAKTGTGKSM AFLLPAIETV LKAMNSGKGV
401: NKVAPIFALI LCPTRELASQ IAAEGKALLK FHDGIGVQTL IGGTRFKLDQ QRLESEPCQI LIATPGRLLD HIENKSGLTS RLMALKLFIV DEADLLLDLG
501: FRRDVEKIID CLPRQRQSLL FSATIPKEVR RVSQLVLKRD HSYIDTIGLG CVETHDKVRQ SCIVAPHESH FHLVPHLLKE HINNTPDYKI IVFCSTGMVT
601: SLMYTLLREM KLNVREIHAR KPQLHRTRVS DEFKESNRLI LVTSDVSARG MNYPDVTLVI QVGIPSDREQ YIHRLGRTGR EGKGGEGLLL IAPWERYFLD
701: ELKDLPLEPI PAPDLDSIVK HQVDQSMAKI DTSIKEAAYH AWLGYYNSVR ETGRDKTTLA ELANRFCHSI GLEKPPALFR RTAVKMGLKG ISGIPIRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)