AT1G55230.1::SUBA5

AT1G55230.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
plasma membrane 0.945
What is SUBAcon?

Predictors

External Curations

no data

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:24833385 (2014): AT5G59650.1:None: PMID:24833385 (2014): AT5G06320.1:None: PMID:24833385 (2014): AT3G17000.1:None: PMID:24833385 (2014): AT1G17280.1:None: PMID:24833385 (2014): AT4G37680.1:None: PMID:24833385 (2014): AT4G30850.1:None: PMID:24833385 (2014): AT1G47640.1:None: PMID:24833385 (2014): AT1G07860.1:None: PMID:24833385 (2014): AT4G25360.1:None: PMID:24833385 (2014): AT4G14455.1:None: PMID:24833385 (2014): AT1G29060.1:None: PMID:24833385 (2014): AT4G38690.1:None: PMID:24833385 (2014): AT4G20790.1:None: PMID:24833385 (2014): AT1G21240.1:None: PMID:24833385 (2014): AT5G49540.1:None: PMID:24833385 (2014): AT1G14700.1:None: PMID:24833385 (2014): AT3G66654.1:None: PMID:24833385 (2014): AT1G34640.1:None: PMID:24833385 (2014): AT5G11890.1:None: PMID:24833385 (2014): AT2G26180.1:None: PMID:24833385 (2014): AT3G10640.1:None: PMID:24833385 (2014): AT3G12180.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

no coexpression data

AT4G25360.1 endoplasmic reticulum
AT1G47640.1 endoplasmic reticulum
AT1G07860.1 endoplasmic reticulum
AT3G12180.1 endoplasmic reticulum
AT3G17000.1 endoplasmic reticulum
AT1G14700.1 extracellular
AT1G34640.1 extracellular
AT3G66654.1 golgi
AT4G37680.1 golgi
AT4G30850.1 golgi
AT4G14455.1 golgi
AT1G29060.1 golgi
AT1G17280.1 golgi
AT3G10640.1 nucleus
AT2G26180.1 nucleus
AT4G20790.1 plasma membrane
AT1G21240.1 plasma membrane
AT4G38690.1 plasma membrane
AT5G06320.1 plasma membrane
AT5G11890.1 plasma membrane
AT5G59650.1 plasma membrane
AT5G49540.1 vacuole

Description (TAIR10)

protein_coding : Family of unknown function (DUF716)

Curator
Summary (TAIR10)

Computational
Description (TAIR10)

Family of unknown function (DUF716) ; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF716 (InterPro:IPR006904); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF716) (TAIR:AT1G55240.1); Has 423 Blast hits to 422 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 178; Fungi - 0; Plants - 243; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Protein Annotations

eggNOG:ENOG410ITNE	eggNOG:ENOG4111FW3	EMBL:AC027034	EMBL:AY630767
EMBL:AY924712	EMBL:CP002684	EnsemblPlants:AT1G55230	EnsemblPlants:AT1G55230.1
entrez:841966	GeneID:841966	GO:GO:0016021	Gramene:AT1G55230.1
hmmpanther:PTHR16007	hmmpanther:PTHR16007:SF29	HOGENOM:HOG000242848	InterPro:IPR006904
KEGG:ath:AT1G55230	OMA:ITIFVMS	PANTHER:PTHR16007	Pfam:PF04819
PhylomeDB:Q9C893	PIR:B96594	Proteomes:UP000006548	RefSeq:NP_175919.1
TAIR:AT1G55230	TMHMM:TMhelix	UniGene:At.50799	UniProt:Q9C893

Coordinates (TAIR10)

chr1:+:20602895..20603797

Molecular Weight (calculated)

33766.10 Da

IEP (calculated)

7.48

GRAVY (calculated)

0.30

Length

300 amino acids

Sequence (TAIR10)
(BLAST)

001: MGTLVGHVAP GFAFFALGLW HLFNNIKLFC LNPNTFTSSP WFPTSKLRHL ELYIIMVCSS ISIASELFIG PKKHQPFDSD GTIPSNHLHN FEHSSISMSF
101: LVYAIFAVVL DQERRRSNIS HGLTMLVASS AFAQQLFLFH LHSADHMGIE GQYHKLLQLI IFVSFLTTLI GITLPKSFLV SFVRSSSITF QGVWFVVMGY
201: MLWTPSLIPK GCFLHEEEGH QVIKCSSDKA IHRAKSLVNI EFSWFFVGIT IFVMSLFLIL SGLYGENAEY SILVTKDKGE ESGEEKQDIE SLKKSKPSFG