AT1G55140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ribonuclease III family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ribonuclease III family protein; FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); BEST Arabidopsis thaliana protein match is: Ribonuclease III family protein (TAIR:AT3G13740.1); Has 1541 Blast hits to 1540 proteins in 746 species: Archae - 0; Bacteria - 1385; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:20572503..20574332 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 26303.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||||||
| Length | 237 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAILSASSTI VRAALDTQPK LRYNPNAPRN VKKNSNLSSF VPPSSPSSSS PATNLSVSVS DLLKRPASKD IGDGFDDTCV GYEKWFPSPP KVEKPRSVFN 101: AASLAYIGDS IYEIYARRHF LFPPLSIEEY NDRVRAVVRC EAQYALLQKL VDDDFLTKDE RDILRWGKNV GSVKTRSTRR AGVAVYNKAS SLETLIGYLY 201: LSNGKRLEEM MQKLGFSSGS STERMVKEAG SNKPSFK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)