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AT1G54760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : AGAMOUS-like 85
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 85 (AGL85); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 64 (TAIR:AT1G29962.1); Has 317 Blast hits to 317 proteins in 62 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 317; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC005388EMBL:CP002684
EnsemblPlants:AT1G54760EnsemblPlants:AT1G54760.1entrez:841917GeneID:841917
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT1G54760.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF194
HOGENOM:HOG000238700InterPro:IPR002100KEGG:ath:AT1G54760ncoils:Coil
Pfam:PF00319Pfscan:PS50066PhylomeDB:Q9ZVL8PIR:F96589
PROSITE:PS50066Proteomes:UP000006548RefSeq:NP_175874.1SMR:Q9ZVL8
STRING:3702.AT1G54760.1SUPFAM:SSF55455TAIR:AT1G54760tair10-symbols:AGL85
UniGene:At.52205UniProt:Q9ZVL8
Coordinates (TAIR10) chr1:+:20433912..20434397
Molecular Weight (calculated) 18176.40 Da
IEP (calculated) 4.84
GRAVY (calculated) -0.63
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MKTDWSHYLS VEMESTISNE LSILCGAEVA FLGYSCSGKP YTFGSPSFQA VAERFLNREA SSSLQRSVMN AHQQAKIQEL CKVYNRMVEE AKTEEAKVKK
101: AAALAETMPV DEDAWWKVDP KEVEDHEEAK KIMEKCEGLY EKLCNEAAAR IQRGDAENNN K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)