AT1G54090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.978 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst subunit exo70 family protein D2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst subunit exo70 family protein D2 (EXO70D2); INVOLVED IN: exocytosis, vesicle docking involved in exocytosis; LOCATED IN: cytosol, nucleus, exocyst; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exo70 exocyst complex subunit (InterPro:IPR004140); BEST Arabidopsis thaliana protein match is: exocyst subunit exo70 family protein D3 (TAIR:AT3G14090.1); Has 901 Blast hits to 890 proteins in 129 species: Archae - 2; Bacteria - 4; Metazoa - 138; Fungi - 84; Plants - 651; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20189737..20191605 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70775.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 622 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATPETRGVD SDLETAEKII LRWDSTTSEE AKENLIFQSG GDREEVDRYL KAVDEVQRHI SSISISDEVK ATIQIAMARL EDELRNILIS QTSTFEPDSL 101: LLDSSLSSSS FASSSRTELE DDTCDDGNEE EEQQQVDLVL PDGSGSDSGS RRLSRSRRSN SKSTSSIREI DLVTPEAVSD LRSIAQRMIG AGYSRECVQV 201: YGNVRKSAME MIFKQLGIVK LGIGDVQRLD WEAVEVKIRR WIRAAKVCVR VVFASEKRLC EQIFEGTMEE TCFMEIVKTS ALQLFNFPEA ISISRRSPEK 301: LFKILDLHDA ITDLLPDMEE IFDSSSSESI LVQATEIQSR LAEAARGILT EFENAVFREP SVVPVPGGTI HPLTRYVMNY LNLISDYRET LIDLVMTKPC 401: RGLKCTNDRN DPDMDISELE GISPLALHMI WTMVMLQFNL EEKSLHYRDE PLSHIFVMNN VHYIVQKVKS SPELMELIGD KYLRKLTGIF RQAATKYQRA 501: TWVRVLNSLR DEGLHVSGSF SSGVSKSALR ERFKAFNTMF EEVHRIQSTW SVPDTQLREE LRISLSEHLI PAYRSFLGRF RGHIESGRHP ENYLKYSVEN 601: LETAVLDFFE GYTTAPHLRR SQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)