AT1G51745.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tudor/PWWP/MBT superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tudor/PWWP/MBT superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT3G21295.1); Has 543 Blast hits to 394 proteins in 123 species: Archae - 0; Bacteria - 201; Metazoa - 137; Fungi - 38; Plants - 92; Viruses - 3; Other Eukaryotes - 72 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:19192055..19194375 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61720.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 563 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESNDDRNLE AINASVGRLV WVRRRNGSWW PGQTLVHDQV PDNSLVGPKV GTPIKLLGRD DVSVDWYILE NSKTVKAFRC GEYDTCIEKA KASSSKKRSG 101: KCTLREDAIN NALKIENEHL AKEDDNLCNL SGEEDSKRCL SGKEDEDSGS SDAEETEDDE LASAPEQLQS SISSQEMNNV GASKVQSKRR RTPNDSEDDG 201: TEGVKRMRGL EDIGKEQAGG IVEHKQDLDL ICAVGLSDSV SNGNTIANGN KVCSPSSLKR NVSECSKRKN RRRQLTKVLE STAMVSVPVT CDQGVSLDCQ 301: GIYDSKVSGM ESVESMKSVS VVINNNSDST GVSCEDAYEN VVGASHNNKA KDSEISSISV SAEDDSSDRL FDVPLTGEEN HSEGFPAACR ISSPRKALVT 401: DLTRRCGRNS HNVFVKNEAS NGSACTSPPA SEPVNCILSG IEKNTSKWQL KGKRNSRQMS KKQEERRNVY GEEANNNSST PHSTLYEVKI EVKASYTKPR 501: VPLVSRMSEL SGKAIVGHPL SVEILEEDYS NGMVMPPVVA KAKSLPKKNE ARSRQQRRQR KRL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)