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AT1G51250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant self-incompatibility protein S1 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant self-incompatibility protein S1 family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT1G51240.1); Has 56 Blast hits to 56 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
DNASU:841548EMBL:AC006085EMBL:BT012115EMBL:BT020546
EMBL:CP002684EnsemblPlants:AT1G51250EnsemblPlants:AT1G51250.1entrez:841548
GeneID:841548Gramene:AT1G51250.1HOGENOM:HOG000064548InterPro:IPR010264
KEGG:ath:AT1G51250OMA:MYFGINEPfam:PF05938PhylomeDB:Q9SYC7
PIR:C96550Proteomes:UP000006548RefSeq:NP_175536.2TAIR:AT1G51250
UniGene:At.37860UniProt:Q9SYC7
Coordinates (TAIR10) chr1:-:19001733..19002152
Molecular Weight (calculated) 16619.10 Da
IEP (calculated) 9.34
GRAVY (calculated) -0.44
Length 139 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHLIFLLLV TTMYFGINEA CKKNHVVIHN EIGPGIDLNI ACRQFSPKRT PSMFHTLKYK DPFYIIEFAD NNQLPHGEKW YCLISHGTRP KYWFDIEVYR
101: QGYYPRCGQL RSWIARKDGI WFTRKYHSPP GHVLDWKIQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)