AT1G50260.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.824 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : N-terminal-transmembrane-C2 domain type 5.1 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
N-terminal-transmembrane-C2 domain type 5.1 (NTMC2T5.1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT3G19830.2); Has 1179 Blast hits to 1055 proteins in 179 species: Archae - 0; Bacteria - 2; Metazoa - 322; Fungi - 255; Plants - 537; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18618255..18621643 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 75370.70 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.29 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||
| Length | 675 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIPQTSSSNF DFRLPVDVSC TLLCPCSNEL RAVFFTRSRV LRPSVKISNF RFISCGFRGN SKNLRLTDSS RKAANRFVIA RFTNEFEDEG SSKESNDQAN 101: FSNFREDPIV DKLRTQLGVI HPLPSPTINR SVISLFVFFF FVGVAFDKLW TWRKRQRETG GDGNQRGVGP WPQVPTSFSL FLEKDLQRKE SVEWVNMVLG 201: KLWKVYRAGI ENWLVGLLQP VIDDLKKPDY VQRVEIKQFS LGDEPLSVRN VERKTSRRAN DLQYQIGLRY TGGARMLLML SLKFGVIPIV VPVGVRDFDI 301: DGELWVKLRL IPTQPWVGAV SCSFVSLPKV TFQLAAFRLF NLMGIPVLSM FLTKLLTVDL PRLFVRPKKI VLDFQKGKAV GPVLEDLKSG EMQEGNKDFV 401: GELSVTLVDA QKLRYMFFGK TDPYAILRLG DQVIRSKRNS QTTVIGAPGQ PIWNQDFQFL VSNPREQVLQ IEVNDRLGFA DMAIGTGEVD LRFLQDTVPT 501: DRIVVLRGGW SLFGKGSAGE ILLRLTYKSY VEEEEDDKTN VKAIDTSDDE MSDSEELGSF VRKGKLSSDD IDQESFMNVL SALIVSEEFQ GIVSSEARDG 601: IIDGGDSLGA PVPSKPDTSK GSERNADVSN LDLLVANSGR GAGGDGGLAL LWFGIITGIL VLVAINMEGS SFFNP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)