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AT1G48770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1639)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1639); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1639 (InterPro:IPR012438); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1639) (TAIR:AT3G18295.1); Has 271 Blast hits to 266 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 271; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JEZPeggNOG:ENOG410ZN7QEMBL:AC073555EMBL:CP002684
EnsemblPlants:AT1G48770EnsemblPlants:AT1G48770.1entrez:841299GeneID:841299
Gramene:AT1G48770.1hmmpanther:PTHR33130hmmpanther:PTHR33130:SF13HOGENOM:HOG000070906
InterPro:IPR012438KEGG:ath:AT1G48770OMA:ACKAPLRPfam:PF07797
PhylomeDB:Q9C745Proteomes:UP000006548RefSeq:NP_175309.1TAIR:AT1G48770
UniGene:At.52079UniGene:At.68971UniProt:Q9C745
Coordinates (TAIR10) chr1:+:18040285..18040916
Molecular Weight (calculated) 19896.70 Da
IEP (calculated) 10.63
GRAVY (calculated) -0.79
Length 179 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPPFERSKR LHNFSLPQLR WGQQRFLRCV NLPSPPPSSS SPDHAATNRS VSIAGVSLTR GGGGGAKNGE VVAAAKPWNL RMRRAACSEP GEEIEIGVNK
101: RRSIIDNEDG GGDKKNEKSK FSIALSRDEI EQDFSFVFGK KPPKRPKKRP RLVQKKLNTI FPGLWLNEEE VTIDSYNGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)