AT1G48380.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : root hair initiation protein root hairless 1 (RHL1) | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a novel nuclear protein required for root hair initiation and ploidy-dependent cell growth. Its sequence has similarity to the C-terminal domain of mammalian DNA topo IIalpha. Shows in vitro DNA binding activity and is likely to be part of the topo VI complex by binding to subunit A. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROOT HAIRLESS 1 (RHL1); FUNCTIONS IN: protein binding, DNA binding; INVOLVED IN: root hair initiation, DNA endoreduplication; LOCATED IN: nucleolus; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; Has 191 Blast hits to 179 proteins in 66 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 37; Plants - 69; Viruses - 0; Other Eukaryotes - 37 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:17877637..17879203 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38906.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.60 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||||||||||
| Length | 355 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVRASSSKKG GSKGGDKDDA ESKQRKRLKT LALDNQLLSD SPAKSHSSLK PSKQVLKHHG TDIIRKSQRK NRFLFSFPGL LAPISAATIG DLDRLSTKNP 101: VLYLNFPQGR MKLFGTILYP KNRYLTLQFS RGGKNVLCDD YFDNMIVFSE SWWIGTKEEN PEEARLDFPK ELAQAENTEF DFQGGAGGAA SVKKLASPEI 201: GSQPTETDSP EVDNEDVLSE DGEFLDDKIQ VTPPVQLTPP VQVTPVRQSQ RNSGKKFNFA ETSSEASSGE SEGNTSDEDE KPLLEPESST RSREESQDGN 301: GITASASKLP EELPAKREKL KSKDSKLVQA TLSNLFKKAE EKTAGTSKAK SSSKA |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)