AT1G48280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17835196..17837553 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 62477.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.33 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.69 | ||||||||||||||||||||||||
| Length | 558 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRISTTSTT PSRVRAANSH YSVISKPRAQ DDNGLTGGKP KSSGYDVKND PAKRRSILLK RAKSAEEEMA VLAPQRARSV NRPAVVEQFG CPRRPISRKS 101: EETVMATAAA EDEKRKRMEE LEEKLVVNES LIKDLQLQVL NLKTELEEAR NSNVELELNN RKLSQDLVSA EAKISSLSSN DKPAKEHQNS RFKDIQRLIA 201: SKLEQPKVKK EVAVESSRLS PPSPSPSRLP PTPPLPKFLV SPASSLGKRD ENSSPFAPPT PPPPPPPPPP RPLAKAARAQ KSPPVSQLFQ LLNKQDNSRN 301: LSQSVNGNKS QVNSAHNSIV GEIQNRSAHL IAIKADIETK GEFINDLIQK VLTTCFSDME DVMKFVDWLD KELATLADER AVLKHFKWPE KKADTLQEAA 401: VEYRELKKLE KELSSYSDDP NIHYGVALKK MANLLDKSEQ RIRRLVRLRG SSMRSYQDFK IPVEWMLDSG MICKIKRASI KLAKTYMNRV ANELQSARNL 501: DRESTKEALL LQGVRFAYRT HQFAGGLDPE TLCALEEIKQ RVPSHLRLAR GNMAGNLS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)