AT1G34270.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.443 plasma membrane 0.400 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Exostosin family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Exostosin family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT2G35100.1); Has 1266 Blast hits to 1263 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 4; Plants - 1015; Viruses - 0; Other Eukaryotes - 61 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:12492571..12494514 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 53888.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 477 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPKIASMAS TRPLCSIPSI FLSFSLLFVV SLLFFFSNSL ISNPNPSISH NTLQNGINVY VAELPRSLNY GLIDKYWSSS TPDSRIPSDP DHPTRKTHSP 101: DKYPPYPENP LIKQYSAEYW IMGDLETSPE KRIGSFAKRV FSESDADVVF VPFFATLSAE MELGNGKGSF RKKSGNEDYQ RQRQVLDFVK NTKAWKRSNG 201: RDHVFVLTDP VAMWHVREEI ALSILLVVDF GGWFRQDSKS SNGTSLPERI QHTQVSVIKD VIVPYTHLLP RLDLSQNQRR HSLLYFKGAK HRHRGGLIRE 301: KLWDLLVNEP GVVMEEGFPN ATGREQSIRG MRNSEFCLHP AGDTPTSCRL FDAIQSLCIP VIVSDTIELP FEGIIDYSEF SVFASVSDAL TPKWLANHLG 401: RFSEREKETL RSRIAKVQSV FVYDNGHADG IGPIEPNGAV NHIWKKVQQK VPMVKEAVIR ERRKPAGASV PLRCQCI |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)