AT1G32415.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pentatricopeptide (PPR) repeat-containing protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G53600.1); Has 53053 Blast hits to 14536 proteins in 238 species: Archae - 0; Bacteria - 16; Metazoa - 90; Fungi - 108; Plants - 52105; Viruses - 0; Other Eukaryotes - 734 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:11695611..11697896 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 85021.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 761 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRALCVKKVC GFLSKLSLRS SISCRRYYGD KIPNYGSYRR GFSNEEALIL RRLSEGGLVH ARHLLDKIPQ RGSINRVVYW TSLLSKYAKT GYLDEARVLF 101: EVMPERNIVT CNAMLTGYVK CRRMNEAWTL FREMPKNVVS WTVMLTALCD DGRSEDAVEL FDEMPERNVV SWNTLVTGLI RNGDMEKAKQ VFDAMPSRDV 201: VSWNAMIKGY IENDGMEEAK LLFGDMSEKN VVTWTSMVYG YCRYGDVREA YRLFCEMPER NIVSWTAMIS GFAWNELYRE ALMLFLEMKK DVDAVSPNGE 301: TLISLAYACG GLGVEFRRLG EQLHAQVISN GWETVDHDGR LAKSLVHMYA SSGLIASAQS LLNESFDLQS CNIIINRYLK NGDLERAETL FERVKSLHDK 401: VSWTSMIDGY LEAGDVSRAF GLFQKLHDKD GVTWTVMISG LVQNELFAEA ASLLSDMVRC GLKPLNSTYS VLLSSAGATS NLDQGKHIHC VIAKTTACYD 501: PDLILQNSLV SMYAKCGAIE DAYEIFAKMV QKDTVSWNSM IMGLSHHGLA DKALNLFKEM LDSGKKPNSV TFLGVLSACS HSGLITRGLE LFKAMKETYS 601: IQPGIDHYIS MIDLLGRAGK LKEAEEFISA LPFTPDHTVY GALLGLCGLN WRDKDAEGIA ERAAMRLLEL DPVNAPGHVA LCNVYAGLGR HDMEKEMRKE 701: MGIKGVKKTP GCSWVVVNGR ANVFLSGDKS ASEAAQMVLP IFCGNEMLEE EEEKPLSLCH C |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)