AT1G29380.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Carbohydrate-binding X8 domain superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Carbohydrate-binding X8 domain superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946); BEST Arabidopsis thaliana protein match is: Carbohydrate-binding X8 domain superfamily protein (TAIR:AT2G30933.1); Has 79591 Blast hits to 28935 proteins in 1734 species: Archae - 133; Bacteria - 28582; Metazoa - 23109; Fungi - 4542; Plants - 9902; Viruses - 1060; Other Eukaryotes - 12263 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:10284209..10285671 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 30689.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||
| Length | 315 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTHRIAPRCF STIMLLCLLY TSPLDVIAQG QGGQGDIPVV NPTAPGGSTT TPTITQPSPP SLTFPGPTTP TGGYPPLDGT TPTGGYPPLY GTTPPGGGDV 101: GGGGGGYGGG TPGGGGGGGG DTGAGAGGGG YGGGGDTGAG GGVGSGQWCI AKANASPTSL QVALDYACGY GGADCGQIQQ GAACYEPNTI RDHASFAFNS 201: YYQKHPGSDS CNFGGAAQLT STDPSKGSCH FSSSSGTVST SPPSQMSPPD FSSPPSSTYP PPITTPTTGI TGSGPPFGVA EPTGLPNSAT SVSHSLLSIF 301: TAVGILMPLL RENYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)