AT1G28010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.994 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-glycoprotein 14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-glycoprotein 14 (PGP14); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: P-glycoprotein 13 (TAIR:AT1G27940.1); Has 862231 Blast hits to 397322 proteins in 4187 species: Archae - 14893; Bacteria - 671155; Metazoa - 18443; Fungi - 12341; Plants - 9398; Viruses - 47; Other Eukaryotes - 135954 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:9763436..9767917 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 136184.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.16 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1247 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDNIEPPFSG NIHAETEVKK EEKKKMKKES VSLMGLFSAA DNVDYFLMFL GGLGTCIHGG TLPLFFVFFG GMLDSLGKLS TDPNAISSRV SQNALYLVYL 0101: GLVNLVSAWI GVACWMQTGE RQTARLRINY LKSILAKDIT FFDTEARDSN FIFHISSDAI LVQDAIGDKT GHVLRYLCQF IAGFVIGFLS VWQLTLLTLG 0201: VVPLIAIAGG GYAIVMSTIS EKSEAAYADA GKVAEEVMSQ VRTVYAFVGE EKAVKSYSNS LKKALKLSKR SGLAKGLGVG LTYSLLFCAW ALLFWYASLL 0301: VRHGKTNGAK AFTTILNVIY SGFALGQAVP SLSAISKGRV AAANIFKMIG NNNLESSERL ENGTTLQNVV GKIEFCGVSF AYPSRPNMVF ENLSFTIHSG 0401: KTFAFVGPSG SGKSTIISMV QRFYEPRSGE ILLDGNDIKN LKLKWLREQM GLVSQEPALF ATTIASNILL GKEKANMDQI IEAAKAANAD SFIKSLPNGY 0501: NTQVGEGGTQ LSGGQKQRIA IARAVLRNPK ILLLDEATSA LDAESEKIVQ QALDNVMEKR TTIVIAHRLS TIRNVDKIVV LRDGQVRETG SHSELISRGG 0601: DYATLVNCQD TEPQENLRSV MYESCRSQAG SYSSRRVFSS RRTSSFREDQ EKTEKDSKGE DLISSSSMIW ELIKLNAPEW LYALLGSIGA VLAGSQPALF 0701: SMGLAYVLTT FYSPFPSLIK REVDKVAIIF VGAGIVTAPI YILQHYFYTL MGERLTSRVR LSLFSAILSN EIGWFDLDEN NTGSLTSILA ADATLVRSAI 0801: ADRLSTIVQN LSLTITALAL AFFYSWRVAA VVTACFPLLI AASLTEQLFL KGFGGDYTRA YSRATSLARE AISNIRTVAA FSAEKQISEQ FTCELSKPTK 0901: SALLRGHISG FGYGLSQCLA FCSYALGLWY ISVLIKRNET NFEDSIKSFM VLLVTAYSVA ETLALTPDIV KGTQALGSVF RVLHRETEIP PDQPNSRLVT 1001: HIKGDIEFRN VSFAYPTRPE IAIFKNLNLR VSAGKSLAVV GPSGSGKSTV IGLIMRFYDP SNGNLCIDGH DIKSVNLRSL RKKLALVQQE PALFSTSIHE 1101: NIKYGNENAS EAEIIEAAKA ANAHEFISRM EEGYMTHVGD KGVQLSGGQK QRVAIARAVL KDPSVLLLDE ATSALDTSAE KQVQEALDKL MKGRTTILVA 1201: HRLSTIRKAD TIVVLHKGKV VEKGSHRELV SKSDGFYKKL TSLQEAV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)