AT1G26620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF863) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Plant protein of unknown function (DUF863); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF863, plant (InterPro:IPR008581); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF863) (TAIR:AT1G69360.1); Has 270 Blast hits to 240 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:9195838..9198719 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 96510.30 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.45 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||
| Length | 867 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRDAADSSSY SGYEKDFMKH TMLEHEAVFK NQVHELHRLY RVQKNLVEEV KGKNLNEVMN VSDHHTSENE SKRKLHGFLL PNSTCGEGSS TQASNGRLQN 101: GGSSNGDASE GRDVKGRRRM IDLQLPADEY LDTDETTNTG ENTSFPPYNQ LKSGRGDASH RSYPSGSCLD VKNSNGLADL NEPLKGQDSE PAALSRDMYS 201: HYGRNNAHVQ GQWLEKNRTQ NGWMVLEAGQ DRSTQRDQVH LPSHSGQVLS NNAFQPQSYP TTDHSKVKFS GERAHRELEV RSKTPQVSYD SYVESSVAST 301: APRSVNDYRP EFFKPLTHWS SSGRTMTSSN QKSYPVQTNP YMNFDTHARP DLSFENRSHV SNGLYQGFSS GSKQSFYNFP STGFKPNASI GEVANSHSFV 401: NLQGPKRQEC SAGLPWLKPQ PPYRSGMSNG FFDLNASTNQ FMDGTDAGDD LTCASVLKGL RSASYSNNAN MGRVETNNSQ SSTKIIGSPI FGKQFVCKQE 501: RTPLIPHSLW IANQHKEVNH LVKRDLDINL PCDASVSVDQ HGAKAYYVDK KEGKKAANFR HYIDLNSCAN EDDEDSGFLS SLSVKTKART WIDLEAPPTL 601: ESEEEGDNSQ DKTNEETWRM MQGQDGNSMN ELIKVAAEAI VAISMAGHQR HPDDAASSST DAASKSPLSW FAEIITSCGD ELERKIDGSP EATDFEGNRE 701: DYSSGEIDYF EAMTLNIQET KEEDYMPEPL VPENLKFEDT CINKPRRGQA RRGRPKRDFQ RDTLPGLSSL SRHEVTEDIQ MFGGLMKTGD YTWSSGLAVR 801: RNSKRKRNVT NINQAPLCPS MAQPMNESVS VGGLEDSKLS GWGQATRRPR RQRCPPAGSN PPTVILT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)