AT1G26170.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: intracellular protein transport, protein import into nucleus, docking; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT3G59020.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:9047539..9054438 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113475.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||||||||||
| Length | 1022 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVVDQDQQWL LGCLSASLDP NQNVRSFAET SLNQASLQPG FGSALCRVAA NKDLSLGLRQ LAAVLLKQFI KKHWRENEEA FEYPLVSSEE KALIRGQLLG 0101: SLDDSHRKIC TAISMDISSI ATYDWPEEWP ELVPFLLKLI SDPSNTNGVH GALRCLALLS GELDDKEVPT LVPVLFPCLH AVVSSPQSYD KYIRGKALTI 0201: VYSCIYVLGA MSGVYKTETT TLVTPVLKVW MNQFSLILEH PVQREDPDDW SLRMEVLKCL NQFVQNFPSL IESELMAIMR PLWHTFESSL QVYLRSSIDG 0301: AEDSYDGRYD SDGEEKSLDT FVIQLFEFLS TIVSSRRLSK TIAGNVRELV YQTVAFLQIT EQQVHTWSMD VNQFVADEDE GSYSCRISGI LLLEEVINTF 0401: GSEGINAVVD AAGKRFQESQ RENSASSLSW WRLREAVLFT LASLSDQLVE AEDLRIDPAN LAKFIEQLIM EDTGIGYHEC PFLYARIFTA VAKFSSVINA 0501: GILEHFLNAA VRAITMDVPP PVKVGACRAL LQLLPDMNSS VILPQIMNLF SSLTDLLRQA TDETLVLVLE TLQQAIKAGH EASASIESII SPVILNVWVA 0601: HISDPFMSID VIDVLEAIKN SPGCLHPLTS RILPFIGPIL NKPHQQPEGL ASGSLDLLTM LLKGAPSDIV KTAYDFCFAA VIRIVLHSED HGELQNATEC 0701: LAAFISSGRQ ELLTWSGDPG FTMRSLLDAT SRLLNPDLEG SGSLFAGKYI LQLILHLPSE MAPHVQDLVA ALVRRLQSAE ILALKGSLLL IFARLVHMSY 0801: PNVDQFINLL VSIPADGHEN SFTYVMTEWT KQQGEIQSAY QIKVTTSALA LLLSTRHSEF AKVNVPGSPI QSNGGITTRS KARSAPEQWT IIPLPMKILA 0901: LLADTLIEIQ EQVLSNEDED SEWEEVHEGD AKAEKDLLRS AGTSQFSKPT YDQLEAMARF ENQDDEVDDH LLGTDPLNEI NLASYVADFL LKFSSEDRPL 1001: FDNLCQGLTN AQRNVIHMAL NR |
||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)