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AT1G20270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
golgi 0.909
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, L-ascorbic acid binding, iron ion binding; INVOLVED IN: oxidation reduction, peptidyl-proline hydroxylation to 4-hydroxy-L-proline; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prolyl 4-hydroxylase, alpha subunit (InterPro:IPR006620), Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G66060.1); Has 2479 Blast hits to 2467 proteins in 338 species: Archae - 0; Bacteria - 393; Metazoa - 997; Fungi - 73; Plants - 409; Viruses - 15; Other Eukaryotes - 592 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G20270-MONOMEREC:1.14.11.2eggNOG:ENOG410XS5JeggNOG:KOG1591
EMBL:AC026234EMBL:AY085158EMBL:BT025038EMBL:CP002684
EnsemblPlants:AT1G20270EnsemblPlants:AT1G20270.1entrez:838615GeneID:838615
Genevisible:Q9LN20GO:GO:0004656GO:GO:0005506GO:GO:0005768
GO:GO:0005789GO:GO:0005794GO:GO:0005802GO:GO:0016021
GO:GO:0031418Gramene:AT1G20270.1hmmpanther:PTHR10869hmmpanther:PTHR10869:SF78
HOGENOM:HOG000096858InParanoid:Q9LN20InterPro:IPR005123InterPro:IPR006620
KEGG:ath:AT1G20270KO:K00472OMA:HSRFQARPaxDb:Q9LN20
Pfam:PF03171Pfam:PF13640Pfam:Q9LN20Pfscan:PS51471
PhylomeDB:Q9LN20PIR:D86336PRIDE:Q9LN20PRO:PR:Q9LN20
PROSITE:PS51471ProteinModelPortal:Q9LN20Proteomes:UP000006548RefSeq:NP_564109.1
SMART:SM00702SMR:Q9LN20STRING:3702.AT1G20270.1SwissPalm:Q9LN20
TAIR:AT1G20270TMHMM:TMhelixUniGene:At.41717UniProt:Q9LN20
Coordinates (TAIR10) chr1:-:7021383..7022923
Molecular Weight (calculated) 32868.60 Da
IEP (calculated) 8.72
GRAVY (calculated) -0.35
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLRHSRFQ ARKWSTLMLV LFMLFMLTIV LLMLLAFGVF SLPINNDESS PIDLSYFRRA ATERSEGLGK RGDQWTEVLS WEPRAFVYHN FLSKEECEYL
101: ISLAKPHMVK STVVDSETGK SKDSRVRTSS GTFLRRGRDK IIKTIEKRIA DYTFIPADHG EGLQVLHYEA GQKYEPHYDY FVDEFNTKNG GQRMATMLMY
201: LSDVEEGGET VFPAANMNFS SVPWYNELSE CGKKGLSVKP RMGDALLFWS MRPDATLDPT SLHGGCPVIR GNKWSSTKWM HVGEYKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)