AT1G19720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus, chloroplast, cytoplasm; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G57430.1); Has 61333 Blast hits to 15549 proteins in 316 species: Archae - 3; Bacteria - 46; Metazoa - 404; Fungi - 515; Plants - 59134; Viruses - 0; Other Eukaryotes - 1231 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6819926..6822610 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100821.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.18 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 894 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKLFVPSFP KTFLNYQTPA KVENSPELHP KSRKKNLSFT KKKEPNIIPD EQFDYLCRNG SLLEAEKALD SLFQQGSKVK RSTYLKLLES CIDSGSIHLG 101: RILHARFGLF TEPDVFVETK LLSMYAKCGC IADARKVFDS MRERNLFTWS AMIGAYSREN RWREVAKLFR LMMKDGVLPD DFLFPKILQG CANCGDVEAG 201: KVIHSVVIKL GMSSCLRVSN SILAVYAKCG ELDFATKFFR RMRERDVIAW NSVLLAYCQN GKHEEAVELV KEMEKEGISP GLVTWNILIG GYNQLGKCDA 301: AMDLMQKMET FGITADVFTW TAMISGLIHN GMRYQALDMF RKMFLAGVVP NAVTIMSAVS ACSCLKVINQ GSEVHSIAVK MGFIDDVLVG NSLVDMYSKC 401: GKLEDARKVF DSVKNKDVYT WNSMITGYCQ AGYCGKAYEL FTRMQDANLR PNIITWNTMI SGYIKNGDEG EAMDLFQRME KDGKVQRNTA TWNLIIAGYI 501: QNGKKDEALE LFRKMQFSRF MPNSVTILSL LPACANLLGA KMVREIHGCV LRRNLDAIHA VKNALTDTYA KSGDIEYSRT IFLGMETKDI ITWNSLIGGY 601: VLHGSYGPAL ALFNQMKTQG ITPNRGTLSS IILAHGLMGN VDEGKKVFYS IANDYHIIPA LEHCSAMVYL YGRANRLEEA LQFIQEMNIQ SETPIWESFL 701: TGCRIHGDID MAIHAAENLF SLEPENTATE SIVSQIYALG AKLGRSLEGN KPRRDNLLKK PLGQSWIEVR NLIHTFTTGD QSKLCTDVLY PLVEKMSRLD 801: NRSDQYNGEL WIEEEGREET CGIHSEKFAM AFGLISSSGA SKTTIRILKN LRMCRDCHDT AKYVSKRYGC DILLEDTRCL HHFKNGDCSC KDYW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)