AT1G17940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.950 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Endosomal targeting BRO1-like domain-containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Endosomal targeting BRO1-like domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: BRO1 (InterPro:IPR004328); BEST Arabidopsis thaliana protein match is: Endosomal targeting BRO1-like domain-containing protein (TAIR:AT1G73390.3); Has 122 Blast hits to 122 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 25; Plants - 96; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6169621..6172035 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45083.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.61 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||
| Length | 405 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGCFASTPKD SGGNRRKPTS IGEVSVYVPG LRIPRAVDFL QSLGDQLPKT LVERLTALRT RIVVMANQEG PTITRTRRKT QHGGSTLLDL HQALLDYLPV 101: VLGLTKDGSH LQFKVQFNWV NQEDEEEETE MSNVWYEVLS VLHLMAMLQM SQANLLLLPR GSSDGHNHPK VSEENRRTSI DIFLKAAGYL DCAVKHVLPQ 201: FSAEQRRSLP VDLAEGTLRA LCLQALGQGV DIQLGMAIDS SKATLAVKRR LSCEMVKYWQ QAQDNLMNLP LANGWGEKHG LFVKWKYVEA KAAAYYYHGL 301: ILDEGNTEKS HGMAVAALQA ADECFKESKK ASEAFNASAP TSRTPPLFGT MKYLTEKIPK DTSSKVRINR DLYSYEKIME TAPTLPDFAL ALKPDEYQLP 401: LAEAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)