AT1G17820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Putative integral membrane protein conserved region (DUF2404) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Putative integral membrane protein conserved region (DUF2404); FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2404, transmembrane (InterPro:IPR019411), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Putative integral membrane protein conserved region (DUF2404) (TAIR:AT1G73200.1); Has 588 Blast hits to 406 proteins in 156 species: Archae - 0; Bacteria - 7; Metazoa - 150; Fungi - 264; Plants - 48; Viruses - 0; Other Eukaryotes - 119 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6131751..6135115 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 90116.20 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.49 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.52 | ||||||||||||||||||||||||||||
| Length | 803 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFSFVGFVVF LSGFFLGILA VLSAEAAGFM YLLKRLNRKR DRIESKPVSD PSIKDFNPRE SIDFCINKQG VVWILELDEG LKNWMKEKLP KEQKRKRGLL 101: EIHPLRKFAR IKDHKLILSD ADSTQSETTV SLIGCSIEAV SGSDLPTRKW AKRFPIKVES KISPALYKGN QVFYIYLETS WEKESWCKAL RLASCENQER 201: FIWYSTKLKE DFRNYVTSLN VAYPSFMKPS LGFSFETLDK GNRTDGSSSK VRLFLKKFSR KRSNREDRKT YSHHGSSSGK CFPGKNNMTD DTDVPIFSRS 301: VSHSSHISGV SHLSGVSDGD SEEKVDMDEG TLALNLLISR LFFDLKRKTG VKNSVQARIQ RLLSNMRTPS YIGELICSDV DTGNLPPHIH ATRVLPMEMS 401: GVWAFELDIE YSGDVVIDVE TRVDIREVDL QQGITDTRLQ PRSSGVVPSN FAEGVEDFEK QLVFPVETVN AGEVKNGGAN KADESKSSRG TKAAPNGVSR 501: WKSILKTIAE QVSQVPISLS IRVSSLRGTL RVHMKPPPSD QLWFGFTSMP DIEFDLASSV GEHKITNSHV AMFLINRFKT AIREAVVLPN CESLTIPWMI 601: AEKDDWVQRK AAPFMWLNQE NDHNTSHATE ARSKSDKPPT SFSCLQAEQM QRTANATQKI ISEIGTLASS SCAQSEQVQK AATAFQKQNT EAEAIMSTPL 701: SNSTTVTIEN DKSLEELKTP LLVPSSSNKQ ETNSRGSSRE VSAVQSPSRS VASSEEDDSR GKKQGRRARM LDLGKKMGEK LEEKRRHMEE KSRQIVEKMR 801: GPS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)