AT1G15480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 ASURE: mitochondrion What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: PENTATRICOPEPTIDE REPEAT 596 (TAIR:AT1G80270.3); Has 10417 Blast hits to 5237 proteins in 200 species: Archae - 3; Bacteria - 20; Metazoa - 156; Fungi - 81; Plants - 9958; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5318307..5320422 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 67535.90 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||
| Length | 594 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFALSKVLRR SQSLRLGACN AVYSKLDIPL GERNIAIESN ALIHDKHEAL PRFYELSWSS STGRRSLSSD AGAKTTGDDD DLEDKNVDLA TPDETSSDSE 101: DGEEFSGDEG DIEGAELELH VPESKRPSEM FKAIVSVSGL SVGSALDKWV EQGKDTNRKE FESAMLQLRK RRMFGRALQM TEWLDENKQF EMEERDYACR 201: LDLISKVRGW YKGEAYIKTI PESFRGELVY RTLLANHVAT SNVRTAEAVF NKMKDLGFPL STFTCNQMLI LYKRVDKKKI ADVLLLLEKE NLKPNLNTYK 301: ILIDTKGSSN DITGMEQIVE TMKSEGVELD LRARALIARH YASAGLKEKA EKVLKEMEGE SLEENRHMCK DLLSVYGYLQ REDEVRRVWK ICEENPRYNE 401: VLAAILAFGK IDKVKDAEAV FEKVLKMSHR VSSNVYSVLL RVYVDHKMVS EGKDLVKQMS DSGCNIGALT WDAVIKLYVE AGEVEKAESS LSKAIQSKQI 501: KPLMSSFMYL MHEYVRRGDV HNTEKIFQRM KQAGYQSRFW AYQTLIQAYV NAKAPAYGMK ERMKADNIFP NKRLAAQLAK ADPFKKTPLS DLLD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)