AT1G15180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : MATE efflux family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G15170.1); Has 7522 Blast hits to 7471 proteins in 1793 species: Archae - 118; Bacteria - 4822; Metazoa - 149; Fungi - 328; Plants - 1330; Viruses - 0; Other Eukaryotes - 775 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:5224452..5226531 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51850.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.75 | ||||||||||||||||||||||||||||||||||||||||
| Length | 482 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDAESTSKT SLLLPVERVE NVTWRDLRDG LFTAELKRLI CFAAPMAAVV IAQFMLQIIS MVMVGHLGNL SLASASLASS FCNVTGFSFI VGLSCALDTL 101: SGQAYGAKLY RKVGVQTYTA MFCLALVCLP LTLIWLNMET LLVFLGQDPS IAHEAGRYAA CLIPGLFAYA VLQPLTRYFQ NQSMITPLLI TSCFVFCLHV 201: PLCWLLVYKS GLGNLGGALA LSFSNCLYTI ILGSLMCFSS ACSETRAPLS MEIFDGIGEF FRYALPSAAM ICLEWWSYEL IILLSGLLPN PQLETSVLSV 301: CLQTTATVYS IHLAIAAAAS TRISNELGAG NSRAANIVVY AAMSLAVVEI LILSTSLLVG RNVFGHVFSS DKETIDYVAK MAPLVSISLI LDGLQGVLSG 401: IARGCGWQHI GAYINLGAFY LWGIPIAASL AFWIHLKGVG LWIGIQAGAV LQTLLLTLVT GCTNWESQAD KARNRMALAY GT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)