AT1G14750.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cyclin family protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a meiotic cyclin-like protein, distinct from all other known Arabidopsis cyclins. It is not required for meiotic DSB formation but is necessary for meiotic DSB repair via the homologous chromosome. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SOLO DANCERS (SDS); FUNCTIONS IN: cyclin-dependent protein kinase activity; INVOLVED IN: chiasma assembly, regulation of cell cycle, double-strand break repair via homologous recombination; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: shoot apex, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: Cyclin family protein (TAIR:AT5G06150.1); Has 3541 Blast hits to 3470 proteins in 348 species: Archae - 0; Bacteria - 40; Metazoa - 1630; Fungi - 464; Plants - 953; Viruses - 3; Other Eukaryotes - 451 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:5079674..5082423 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65204.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 578 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEIAMRNSK RKPEPTPFAG KKLRSTRLRR KRAQISPVLV QSPLWSKQIG VSAASVDSCS DLLADDNVSC GSSRVEKSSN PKKTLIEEVE VSKPGYNVKE 101: TIGDSKFRRI TRSYSKLHKE KEGDEIEVSE SSCVDSNSGA GLRRLNVKGN KINDNDEISF SRSDVTFAGH VSNSRSLNFE SENKESDVVS VISGVEYCSK 201: FGSVTGGADN EEIEISKPSS FVEADSSLGS AKELKPELEI VGCVSDLACS EKFSEEVSDS LDDESSEQRS EIYSQYSDFD YSDYTPSIFF DSGSEFSEKS 301: SSDSPISHSR SLYLQFKEQF CRSTIPNDFG SSCEEEIHSE LLRFDDEEVE ESYLRLRERE RSHAYMRDCA KAYCSRMDNT GLIPRLRSIM VQWIVKQCSD 401: MGLQQETLFL GVGLLDRFLS KGSFKSERTL ILVGIASLTL ATRIEENQPY NSIRKRNFTI QNLRYSRHEV VAMEWLVQEV LNFKCFTPTI FNFLWFYLKA 501: ARANPEVERK AKSLAVTSLS DQTQLCFWPS TVAAALVVLA CIEHNKISAY QRVIKVHVRT TDNELPECVK SLDWLLGQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)