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AT1G14500.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.667
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G14480.1); Has 10084 Blast hits to 5540 proteins in 307 species: Archae - 14; Bacteria - 721; Metazoa - 5684; Fungi - 405; Plants - 1520; Viruses - 27; Other Eukaryotes - 1713 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504EMBL:AC012188EMBL:CP002684
EnsemblPlants:AT1G14500EnsemblPlants:AT1G14500.1entrez:838012Gene3D:1.25.40.20
GeneID:838012GO:GO:0016021Gramene:AT1G14500.1hmmpanther:PTHR24128
hmmpanther:PTHR24128:SF24HOGENOM:HOG000131606InterPro:IPR002110InterPro:IPR020683
InterPro:IPR026961KEGG:ath:AT1G14500OMA:HREFITWPfam:PF00023
Pfam:PF12796Pfam:PF13962Pfscan:PS50088Pfscan:PS50297
PhylomeDB:Q9M9R3PIR:H86279PROSITE:PS50088PROSITE:PS50297
Proteomes:UP000006548RefSeq:NP_172902.1SMART:SM00248SMR:Q9M9R3
STRING:3702.AT1G14500.1SUPFAM:SSF48403TAIR:AT1G14500TMHMM:TMhelix
UniGene:At.51609UniProt:Q9M9R3
Coordinates (TAIR10) chr1:+:4960375..4961780
Molecular Weight (calculated) 48823.60 Da
IEP (calculated) 7.32
GRAVY (calculated) 0.20
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPRLQHAAE TGSINDFYAL IEENPYILDN INAVPFVNTP LHVAAASDNI PFAMEMLNLK PSFARKLNTS GYSPLHLAVE KDHREFITWL LWRDPGLVRV
101: KGREGITPFH LLAIRGDVNL VAECLKYCPV CIQDVSVNGH NALHLAVMND RFEILQVLTG WLQRMSQKDS ASTESDFLNR KDLAHNTPLH LAAYKEDHQA
201: VKLLLQCQLV KLNEVNADGL TFLDILRNNG QSRDLDKDLE QVVVKTGCKE AASLPQLEKP SDQFKSPVTF LAHCSIGIRR LRSDTSEEGR AVFLIICTLI
301: LTSTYQTALQ PPGGVHQSEG GGTAVMKQTF FIVLWVSNTI GFCCALLYTF CLLPIGSLFT TWFFWIGASL GVSYALAMAI ISPNPLLFLC AAFTLYLLFP
401: MYLFMEIFIA LRLSHLKAAV NRMFVTFVKQ RGTLRI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)